Spatial Omics Weekly | January 2023 Week 1

Weekly trends and developments in spatial -omics.

In the past week of spatial -omics there were

• ~10 related preprints published on bioRxiv

• ~50 related publications found on PubMed

• ~98 related tweets on Twitter

• 10 commits to spatial -omics repositories on Github

The most tweeted paper of the week was:

Integration of whole transcriptome spatial profiling with protein markers

The most popular tweet of the week was:

Nature Biotechnology @NatureBiotech

Integration of whole transcriptome spatial profiling with protein markers bit.ly/3VBuEzv

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Top five papers of the week by altmetric scores

1. Integration of whole transcriptome spatial profiling with protein markers

   • Altmetric Score: 330

2. Molecular and spatial signatures of mouse brain aging at single-cell resolution

   • Altmetric Score: 143

3. Solid-phase capture and profiling of open chromatin by spatial ATAC

   • Altmetric Score: 67

4. Neurodevelopmental disorders—high-resolution rethinking of disease modeling

   • Altmetric Score: 50

5. Single-cell transcriptomic and spatial landscapes of the developing human pancreas

   • Altmetric Score: 44

Results collected 2023-01-08T17:05:17.147 EST

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Top five tweets of the week by favorites and retweets

1.

Nature Biotechnology @NatureBiotech

Integration of whole transcriptome spatial profiling with protein markers bit.ly/3VBuEzv

2.

Enric Llorens @Ellorebo

Thrilled that our Spatial ATAC manuscript is now out @NatureBiotech  Open: nature.com/articles/s4158… We repurposed the #Visium platform @10xGenomics to capture and profile open chromatin with spatial resolution in tissue sections from mouse and human.

Margherita Zamboni @MargheritaZamb2

Thrilled to see our paper on @biorxivpreprint! Repurposing @10xGenomics #Visium platform to get spatially resolved chromatin accessibility data. Awesome work by @steelstahl lab with @FrisenJonas and the brand new lab of @Ellorebo. #preprint #postdoclife https://t.co/AeDiw92jZT

3.

Nature Biotechnology @NatureBiotech

Solid-phase capture and profiling of open chromatin by spatial ATAC go.nature.com/3VTu00h

4.

Juhyun Kim @juhyunk_

Spatial ATAC 🧬 Solid-phase capture and profiling of open chromatin by spatial ATAC nature.com/articles/s4158…

nature.comSolid-phase capture and profiling of open chromatin by spatial ATAC - Nature BiotechnologyChromatin accessibility profiles are spatially resolved in tissue sections.

5.

Nature Portfolio @NaturePortfolio

A @NatureBiotech paper presents Spatial PrOtein and Transcriptome Sequencing (SPOTS), which combines visium spatial transcriptomics with markers for more than 30 proteins. go.nature.com/3CRrrpd

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Top spatial -omic package development activity this week on Github

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Interested in other trends, packages or branches? Have feedback? Please reach out with any suggestions!